- BIOBASE
The focus of the GBF project "Molecular Bioinformatics of Gene Regulation" are regulatory genomic signals and regions that govern transcriptional control based on TRANSFAC - The Transcription Factor Database. It compiles data about gene regulatory DNA sequences and protein factors binding to and acting through them.
http://www.gene-regulation.com/
(Added: Mon Apr 04 2011 Hits: 0 Rating: 0.00 Votes: 0)
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- BioGRID
Database of genetic and physical interactions. It contains interaction data from many sources, including several genome/proteome-wide studies, the MIPS database, and BIND.
http://www.thebiogrid.org/
(Added: Mon Apr 04 2011 Hits: 0 Rating: 0.00 Votes: 0)
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- BioModels Database
Resource for storing, searching and retrieving published mathematical models of biological interests. Models present in BioModels Database are annotated and linked to relevant data resources, such as publications, databases of compounds and pathways, controlled vocabularies, etc.
http://www.ebi.ac.uk/biomodels/
(Added: Mon Apr 04 2011 Hits: 0 Rating: 0.00 Votes: 0)
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- CUBIC: Columbia University Bioinformatics Center
Features PredictProtein service for sequence analysis and protein structure prediction, META for single-page interface to validated sequence analysis, PredictNLS for prediction and analysis of nuclear localization signals, EVA for evaluation of automatic protein structure prediction servers, and DSSPcont for continuous assignment of protein secondary structure.
http://cubic.bioc.columbia.edu/
(Added: Mon Apr 04 2011 Hits: 0 Rating: 0.00 Votes: 0)
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- GenePattern
This platform provides over 100 methods for the analysis and visualization of gene expression, copy number, proteomic and other data. It enables biologists to add new analyses and create workflows that can be shared, edited and published.
http://www.genepattern.org
(Added: Mon Apr 04 2011 Hits: 0 Rating: 0.00 Votes: 0)
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- gp2fasta
Converts gp files from NCBI GenPept format to fasta. Its main purpose is to create fasta files with short, but still accurate headers for sequence.
http://gp2fasta.ovh.org/
(Added: Mon Apr 04 2011 Hits: 0 Rating: 0.00 Votes: 0)
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- INCBI Irish National Centre for BioInformatics
Hosts Irish embnet node, Gives links to Database browsing and interrogation at SRS, European (EBI) servers, Blast server for parasite genomes (EBI), US (NCBI) servers, Protein structure prediction, PredictProtein Server in Heidelberg, Gene identification, splice sites, exons, introns and a list of gene structure prediction programs
http://acer.gen.tcd.ie/
(Added: Mon Apr 04 2011 Hits: 0 Rating: 0.00 Votes: 0)
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- Mobyle
Framework and web portal specifically designed for the integration of bioinformatics software and databanks. Provides a tutorial and an interactive guided tour.
http://mobyle.pasteur.fr
(Added: Mon Apr 04 2011 Hits: 0 Rating: 0.00 Votes: 0)
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- Mulan
Performs single-coverage local multiple DNA sequence alignments of finished and draft-quality genome sequences. It also provides with an option to predict transcription factor binding sites evolutionarily conserved across multiple species.
http://mulan.dcode.org/
(Added: Mon Apr 04 2011 Hits: 0 Rating: 0.00 Votes: 0)
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- ParAlign
Service using the ParAlign algorithm to compare genetic sequences. Apparently it is as fast as BLAST and as sensitive as Smith-Waterman.
http://www.paralign.org/
(Added: Mon Apr 04 2011 Hits: 0 Rating: 0.00 Votes: 0)
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- WebACT
A database of sequence comparisons between all publicly available prokaryotic genome sequences, allowing the on-line visualisation of comparisons between up to five genomic sequences, using the Artemis Comparison Tool. User can perform their comparisons on their own data.
http://www.webact.org
(Added: Mon Apr 04 2011 Hits: 0 Rating: 0.00 Votes: 0)
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- Your Lab Data
A free web-based Laboratory Information Management System (LIMS), aimed at a typical small molecular biology laboratory allowing members to have their own private forum, events, Electronic Lab Notebook (ELN) and a LIMS area.
http://www.yourlabdata.com/
(Added: Mon Apr 04 2011 Hits: 0 Rating: 0.00 Votes: 0)
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