- AnnHyb
Free software for working with and managing nucleotide sequences in multiple formats. Features include sequence annotation, restriction analysis, pattern searching, retrieval from servers. Released under GNU Public Licence.
http://bioinformatics.org/annhyb/
(Added: Mon Apr 04 2011 Hits: 0 Rating: 0.00 Votes: 0)
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- Cytoscape
Open source bioinformatics software platform for visualizing molecular interaction networks and integrating these interactions with gene expression profiles and other state data. It is also a general platform for complex network analysis and visualization.
http://www.cytoscape.org/
(Added: Mon Apr 04 2011 Hits: 0 Rating: 0.00 Votes: 0)
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- EMBOSS
The European Molecular Biology Open Software Suite. An open source project started by the EMBnet community in order to replace proprietary systems like GCG.
http://emboss.sourceforge.net/
(Added: Mon Apr 04 2011 Hits: 0 Rating: 0.00 Votes: 0)
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- Expression Profiler
An open, extensible web-based collaborative platform for microarray gene expression, sequence and PPI data analysis, exposing distinct chainable components for clustering, pattern discovery, statistics, machine-learning algorithms and visualization.
http://www.ebi.ac.uk/expressionprofiler/
(Added: Mon Apr 04 2011 Hits: 0 Rating: 0.00 Votes: 0)
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- Geneious
This research software is designed for biologists and not computer scientists. It combines all the major DNA and protein sequence analysis tools into one software solution.
http://www.geneious.com
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- GeneSifter
Provides complete systems for data-intensive genetic analysis applications like microarrays and next gen sequencing-based transcription. From Geospiza, Seattle, USA.
http://www.genesifter.net
(Added: Mon Apr 04 2011 Hits: 0 Rating: 0.00 Votes: 0)
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- HMMER
Profiles protein sequence data using hidden Markov models of a statistical descriptions of a sequence family's consensus. HMMER is a freely distributable implementation of profile HMM software for protein sequence analysis.
http://hmmer.janelia.org/
(Added: Mon Apr 04 2011 Hits: 0 Rating: 0.00 Votes: 0)
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- Mauve
Free software for constructing global alignments of multiple rearranged genomes. The visualization environment displays sequence similarity profiles and annotated sequence features.
http://gel.ahabs.wisc.edu/mauve/
(Added: Mon Apr 04 2011 Hits: 0 Rating: 0.00 Votes: 0)
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- RGBG Analyzer
Commercial software to analyses the red, green, blue, and gray color values of user-selected areas of images in gif, tiff, bmp, jpeg format. Windows 2000 and XP.
http://www.immunokin.com
(Added: Mon Apr 04 2011 Hits: 0 Rating: 0.00 Votes: 0)
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- STRAP
Software supports the analysis of hundreds of proteins and integrates aa sequence, secondary structure, 3D-structure and genomic- and mRNA-sequence, and residue annotation.
http://www.charite.de/bioinf/strap
(Added: Mon Apr 04 2011 Hits: 0 Rating: 0.00 Votes: 0)
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- The ARB Project
A free sequence database application for Unix. It includes a sequence editor, several sequence aligners, phylogeny reconstruction tools, probe/primer search and generation, genome annotation and visualization. In addition to the integrated user-interface the ARB database can be accessed using Perl or C.
http://www.arb-home.de
(Added: Mon Apr 04 2011 Hits: 0 Rating: 0.00 Votes: 0)
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